Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations.
Identifieur interne : 002807 ( Main/Exploration ); précédent : 002806; suivant : 002808Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations.
Auteurs : D. Lindtke [Suisse] ; S C González-Martínez ; D. Macaya-Sanz ; C. LexerSource :
- Heredity [ 1365-2540 ] ; 2013.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Chromosomes de plante, Populus.
- méthodes : Cartographie chromosomique.
- classification : Génotype, Liaison génétique, Locus de caractère quantitatif, Populus, Répétitions microsatellites.
English descriptors
- KwdEn :
- MESH :
- classification : Populus.
- genetics : Chromosomes, Plant, Populus.
- methods : Chromosome Mapping.
- Genetic Linkage, Genotype, Microsatellite Repeats, Quantitative Trait Loci.
Abstract
Uncovering the genetic architecture of species differences is of central importance for understanding the origin and maintenance of biological diversity. Admixture mapping can be used to identify the number and effect sizes of genes that contribute to the divergence of ecologically important traits, even in taxa that are not amenable to laboratory crosses because of their long generation time or other limitations. Here, we apply admixture mapping to naturally occurring hybrids between two ecologically divergent Populus species. We map quantitative trait loci for eight leaf morphological traits using 77 mapped microsatellite markers from all 19 chromosomes of Populus. We apply multivariate linear regression analysis allowing the modeling of additive and non-additive gene action and identify several candidate genomic regions associated with leaf morphology using an information-theoretic approach. We perform simulation studies to assess the power and limitations of admixture mapping of quantitative traits in natural hybrid populations for a variety of genetic architectures and modes of gene action. Our results indicate that (1) admixture mapping has considerable power to identify the genetic architecture of species differences if sample sizes and marker densities are sufficiently high, (2) modeling of non-additive gene action can help to elucidate the discrepancy between genotype and phenotype sometimes seen in interspecific hybrids, and (3) the genetic architecture of leaf morphological traits in the studied Populus species involves complementary and overdominant gene action, providing the basis for rapid adaptation of these ecologically important forest trees.
DOI: 10.1038/hdy.2013.69
PubMed: 23860234
PubMed Central: PMC3833683
Affiliations:
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Admixture mapping can be used to identify the number and effect sizes of genes that contribute to the divergence of ecologically important traits, even in taxa that are not amenable to laboratory crosses because of their long generation time or other limitations. Here, we apply admixture mapping to naturally occurring hybrids between two ecologically divergent Populus species. We map quantitative trait loci for eight leaf morphological traits using 77 mapped microsatellite markers from all 19 chromosomes of Populus. We apply multivariate linear regression analysis allowing the modeling of additive and non-additive gene action and identify several candidate genomic regions associated with leaf morphology using an information-theoretic approach. We perform simulation studies to assess the power and limitations of admixture mapping of quantitative traits in natural hybrid populations for a variety of genetic architectures and modes of gene action. Our results indicate that (1) admixture mapping has considerable power to identify the genetic architecture of species differences if sample sizes and marker densities are sufficiently high, (2) modeling of non-additive gene action can help to elucidate the discrepancy between genotype and phenotype sometimes seen in interspecific hybrids, and (3) the genetic architecture of leaf morphological traits in the studied Populus species involves complementary and overdominant gene action, providing the basis for rapid adaptation of these ecologically important forest trees. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23860234</PMID><DateCompleted><Year>2014</Year><Month>06</Month><Day>15</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-2540</ISSN><JournalIssue CitedMedium="Internet"><Volume>111</Volume><Issue>6</Issue><PubDate><Year>2013</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Heredity</Title><ISOAbbreviation>Heredity (Edinb)</ISOAbbreviation></Journal><ArticleTitle>Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations.</ArticleTitle><Pagination><MedlinePgn>474-85</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/hdy.2013.69</ELocationID><Abstract><AbstractText>Uncovering the genetic architecture of species differences is of central importance for understanding the origin and maintenance of biological diversity. Admixture mapping can be used to identify the number and effect sizes of genes that contribute to the divergence of ecologically important traits, even in taxa that are not amenable to laboratory crosses because of their long generation time or other limitations. Here, we apply admixture mapping to naturally occurring hybrids between two ecologically divergent Populus species. We map quantitative trait loci for eight leaf morphological traits using 77 mapped microsatellite markers from all 19 chromosomes of Populus. We apply multivariate linear regression analysis allowing the modeling of additive and non-additive gene action and identify several candidate genomic regions associated with leaf morphology using an information-theoretic approach. We perform simulation studies to assess the power and limitations of admixture mapping of quantitative traits in natural hybrid populations for a variety of genetic architectures and modes of gene action. Our results indicate that (1) admixture mapping has considerable power to identify the genetic architecture of species differences if sample sizes and marker densities are sufficiently high, (2) modeling of non-additive gene action can help to elucidate the discrepancy between genotype and phenotype sometimes seen in interspecific hybrids, and (3) the genetic architecture of leaf morphological traits in the studied Populus species involves complementary and overdominant gene action, providing the basis for rapid adaptation of these ecologically important forest trees. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lindtke</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Unit of Ecology and Evolution, Department of Biology, University of Fribourg, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>González-Martínez</LastName><ForeName>S 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Lexer</name><name sortKey="Macaya Sanz, D" sort="Macaya Sanz, D" uniqKey="Macaya Sanz D" first="D" last="Macaya-Sanz">D. Macaya-Sanz</name></noCountry><country name="Suisse"><region name="Canton de Fribourg"><name sortKey="Lindtke, D" sort="Lindtke, D" uniqKey="Lindtke D" first="D" last="Lindtke">D. Lindtke</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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